dropReport

To run the report you have to install:

• dropestr R package with all dependencies (dependencies = T)
• pandoc
• R packages: install.packages(c("optparse","rmarkdown"))

To run the report use:

./dropReport.Rsc cell.counts.rds

To see full list of options use:

./dropReport.Rsc -h

Troubleshooting

If you get the error “pandoc version 1.12.3 or higher is required and was not found”, try to set path in the corresponding environment variable: export RSTUDIO_PANDOC=/path/to/pandoc.